1.      Blackstone C, Chang CR (2011) Mitochondria unite to survive. Nat Cell Biol.  
2011 May;13(5): 521-522.

1.      Wey, M.T., Lyu, P.C. and Kan, L.S. (2010). “Thermodynamic and Kinetic Studies of a Stable Imperfect DNA Triplex by Spectroscopic and Calorimetric Methods.” Journal of the Chinese Chemical Society 57(3B): 496-504.

2.      Tseng, H.C., Lyu, P.C. and Lin, W.C. (2010). “Nuclear localization of orphan receptor protein kinase (Ror1) is mediated through the juxtamembrane domain.” BMC Cell Biology 11: 48.

3.      Huang, P.J., Liu, Y.C., Lee, C.C., Lin, W.C., Gan, R.R.C., Lyu, P.C.* and Tang, P. (2010). “DSAP: deep-sequencing small RNA analysis pipeline.” Nucleic Acids Research 38: W385-W391. (*corresponding author).

4.      Huang, H. L., Hsing, H.W., Lai, T.C., Chen, Y.W., Lee, T.R., Chan, H.T., Lyu, P.C., Wu, C.L., Lu, Y.C., Lin, S.T., Lin, C.W., Lai, C.H., Chang, H.T., Chou, H.C. and Chan, H.L. (2010). “Trypsin-induced proteome alteration during cell subculture in mammalian cells.” Journal of Biomedical Science 17: 36.

5.      Ho, M.R., Lou, Y.C., Wei, S.Y., Luo, S.C., Lin, W.C., Lyu, P.C. and Chen, C.P. (2010). “Human RegIV Protein Adopts a Typical C-Type Lectin Fold but Binds Mannan with Two Calcium-Independent Sites.” Journal of Molecular Biology 402(4): 682-695.

6.      Chu, C.H., Lo, W.C., Wang, H.W., Hsu, Y.C., Hwang, J.K., Lyu, P.C., Pai, T.W. and Tang, C.Y. (2010). “Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques.” PLOS One 5(10).

7.      Chou, W.Y., Chou, W.I., Pai, T.W., Lin, S.C., Jiang, T.Y., Tang, C.Y. and Chang, M.D.T.* (2010). “Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules.” Bioinformatics 26(8): 1022-1028. (*corresponding author).

1.      Chang, Y.H., Chang, C.C., Chen, Y.C., Yang, A.C.M., Liu, Y.C. and Cheng, C.K. (2009). “Novel Polymeric Thin Films from Labile Lactic Acid by a Dry Process.” Plasma Processes and Polymers 6(1): 45-57.

2.      Yang, Y.F., Cheng, K.C., Tsai, P.H., Liu, C.C., Lee, T.R. and Lyu, P.C. (2009). “Alanine substitutions of noncysteine residues in the cysteine-stabilized alpha beta motif.” Protein Science 18(7): 1498-1506.

3.      Lo, W.C., Lee, C.Y., Lee, C.C. and Lyu, P.C.* (2009). “iSARST: an integrated SARST web server for rapid protein structural similarity searches.” Nucleic Acids Research 37: W545-W551. (*corresponding author).

4.      Lo, W.C., Lee, C.C., Lee, C.Y. and Lyu, P.C.* (2009). “CPDB: a database of circular permutation in proteins.” Nucleic Acids Research 37: D328-D332. (*corresponding author).

5.      Lo, A., Chiu, Y.Y., Rodland, E.A., Lyu, P.C., Sung, T.Y. and Hsu, W.L. (2009). “Predicting helix-helix interactions from residue contacts in membrane proteins.” Bioinformatics 25(8): 996-1003.

6.      Ku, T.H., Lu, P.Y., Chan, C.H., Wang, T.S., Lai, S.Z., Lyu, P.C. and Hsiao, N.W. (2009). “Predicting melting temperature directly from protein sequences.” Computational Biology and Chemistry 33(6): 445-450.

7.      Chiang, Y.K., Kuo, C.C., Wu, Y.S., Chen, C.T., Coumar, M.S., Wu, J.S., Hsieh, H.P., Chang, C.Y., Jseng, H.Y., Wu, M.H., Leou, J.S., Song, J.S., Chang, J.Y., Lyu, P.C., Chao, Y.S. and Wu, S.Y. (2009). “Generation of Ligand-Based Pharmacophore Model and Virtual Screening for Identification of Novel Tubulin Inhibitors with Potent Anticancer Activity.” Journal of Medicinal Chemistry 52(14): 4221-4233.

8.      Chen, T., Lee, T.R., Liang, W.G., Chang, W.S.W. and Lyu, P.C.* (2009). “Identification of trypsin-inhibitory site and structure determination of human SPINK2 serine proteinase inhibitor.” Proteins-Structure Function and Bioinformatics 77(1): 209-219. (*corresponding author).

9.      Lin, S.C., Lin, I.P., Chou, W.I., Hsieh, C.A., Liu, S.H., Huang, R.Y., Sheu, C.C. and Chang, M.D.T.* (2009). “CBM21 starch-binding domain: A new purification tag for recombinant protein engineering.” Protein Expression and Purification 65(2): 261-266. (*corresponding author)

10. Chen, G.Y., Chen, C.Y., Chang, M.D.T., Matsuura, Y. and Hu, Y.C. (2009). “Concanavalin A Affinity Chromatography for Efficient Baculovirus Purification.” Biotechnology Progress J. 25(6): 1669-1677.

11. Wu, S.C.* (2009). “RNA interference technology to improve recombinant protein production in Chinese hamster ovary cells.” Biotechnology Advances 27(4): 417-422. (*corresponding author).

1.      Lo, W.C. and Lyu, P.C.* (2008). “CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships.” Genome Biology 9(1): 16. (*corresponding author).

2.      Lo, A., Chiu, H.S., Sung, T.Y., Lyu, P.C. and Hsu, W.L. (2008). “Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.” Journal of Proteome Research 7(2): 487-496.

3.      Lai, Y.T., Cheng, C.S., Liu, Y.N., Liu, Y.J. and Lyu, P.C.* (2008). “Effects of ligand binding on the dynamics of rice nonspecific lipid transfer protein 1: A model from molecular simulations.” Proteins-Structure Function and Bioinformatics 72(4): 1189-1198. (*corresponding author).

4.      Cheng, C.S., Chen, M.N., Lai, Y.T., Chen, T., Lin, K.F., Liu, Y.J. and Lyu, P.C.* (2008). “Mutagenesis study of rice nonspecific lipid transfer protein 2 reveals residues that contribute to structure and ligand binding.” Proteins-Structure Function and Bioinformatics 70(3): 695-706. (*corresponding author).

5.      Tung, J.Y., Chang, M.D.T., Chou, W.I., Liu, Y.Y., Yeh, Y.H., Chang, F.Y., Lin, S.C., Qiu, Z.L. and Sun, Y.J. (2008). "Crystal structures of the starch-binding domain from Rhizopus oryzae glucoamylase reveal a polysaccharide-binding path." Biochemical Journal 416: 27-36.

6.      Liao, C.J., Chin, K.H., Lin, C.H., Tsai, P.S.F., Lyu, P.C., Young, C.C., Wang, A.H.J. and Chou, S.H. (2008). “Crystal structure of DFA0005 complexed with alpha-ketoglutarate: A novel member of the ICL/PEPM superfamily from alkali-tolerant Deinococcus ficus.” Proteins-Structure Function and Bioinformatics 73(2): 362-371.

7.      Liu, P.F., Wang, Y.K., Chang, W.C., Chang, H.Y. and Pan, R.L. (2008). “Regulation of Arabidopsis thaliana Ku genes at different developmental stages under heat stress.” Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms 1779(6-7): 402-407.

8.      Liu, P.F., Chang, W.C., Wang, Y.K., Chang, H.Y. and Pan, R.L. (2008). “Signaling pathways Ku mediating the suppression of Arabidopsis thaliana gene expression by abscisic acid.” Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms 1779(3): 164-174.